PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01263.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 259aa    MW: 29145.2 Da    PI: 8.295
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01263.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof101.26.3e-322073558
                   zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58
                              + cprC+stntkfCyynny +sqPry Ck C r+Wt+GGalrn+P+Gg+ r  
  Rsa1.0_01263.1_g00005.1 20 PRVCPRCNSTNTKFCYYNNYRVSQPRYKCKDCLRHWTHGGALRNIPIGGSGRII 73
                             678**********************************************99965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-191571IPR003851Zinc finger, Dof-type
PfamPF027011.3E-282171IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.3782175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDYSSVFAGD NGVNQEKPPP RVCPRCNSTN TKFCYYNNYR VSQPRYKCKD CLRHWTHGGA  60
LRNIPIGGSG RIINHTRIDQ PLVSQAVSAG IQQVSPRHQP FLHGQETNKF VGSFGDSSSG  120
IAFGNQIGSF PEIHSDLVLP LPPMDHSYFH DGLFQQDYYN IESNALIGNY LNNQSIGNHL  180
INQSIGSYNL MSSHHNSYIN QEDQNKWNQR FNNTMNMNHN ASTSGSRVSL ESDHMNKNNG  240
NIKNNCVCKS SYHLEKHGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654838.11e-140PREDICTED: dof zinc finger protein DOF4.3-like
SwissprotQ9SUA93e-50DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A078CMV41e-140A0A078CMV4_BRANA; BnaA08g09920D protein
STRINGBra020881.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-51Dof-type zinc finger domain-containing protein